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Contributes to #6469.
To handle global variables:
* Add EntityKindGlobalVariable
* Modify TraverseVarDecl() function logic
* Add a check to ensure StartLine and EndLine are in the same file
* Fix missing #include <cstdint> in json.h
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Extend codesearch clang tool to export info about function references
(calls, takes-address-of).
Add pkg/codesearch command find-references.
Export find-references in pkg/aflow/tools/codesearcher to LLMs.
Update #6469
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dir-index provides a list of subdirectories and files in the given
directory in the source tree.
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